English &aname(y5ca2df2,super,full)\{†};

SayaMatcher has been a set of programs (called 'pipeline') for locating short but meaningful DNA elements in a genome scale maintained by Hidemasa Bono at Saitama Medical School DBCLS, Japan. Several programs in EMBOSS package (http://emboss.sourceforge.net/ ) are used for the calculation. The results are exported as LDAS (for DAS compliant genome browsers, for example, Ensembl http://www.ensembl.org/ ) format to see them in the genome fully utilizing DAS (Distributed Annotation System; http://www.biodas.org/ ). Although it is far from complete, it is now open for download from here (Instruction for scripts).

SayaMatcher Ensembl

http://das.DBCLS.jp/cgi-bin/das

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Attach file: filesayamatcher.png 985 download [Information]

SourceForge.jp Last-modified: Fri, 15 Jan 2010 11:44:20 JST (2810d)