SayaMatcher

• Go to sourceforge SayaMatcher page

English &aname(y5ca2df2,super,full)\{†};

SayaMatcher has been a set of programs (called 'pipeline') for locating short but meaningful DNA elements in a genome scale maintained by Hidemasa Bono at Saitama Medical School DBCLS, Japan. Several programs in EMBOSS package (http://emboss.sourceforge.net/ ) are used for the calculation. The results are exported as LDAS (for DAS compliant genome browsers, for example, Ensembl http://www.ensembl.org/ ) format to see them in the genome fully utilizing DAS (Distributed Annotation System; http://www.biodas.org/ ). Although it is far from complete, it is now open for download from here (Instruction for scripts).

• You can also browse source codes for SayaMatcher in b-src website.

†

SayaMatcher Ensembl

http://das.DBCLS.jp/cgi-bin/das

29263 visits since Jan 1st, 2005